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Analysis Driven by 
Best-Published Pipelines

My Services

RNA sequencing analysis

RNA sequencing analysis for data obtained from organisms with a reference genome and annotation.

(https://www.nature.com/articles/s41587-020-0439-x)

Variant calling

Identify germline or somatic short variants (SNPs and Indels) in your samples to further produce a multi-VCF format.

(https://gatk.broadinstitute.org/hc/en-us/sections/360007226651-Best-Practices-Workflows)

Single-cell analysis

Identify and interpret heterogeneity from single-cell RNA-seq data and integrate diverse types of single-cell data.

(https://satijalab.org/seurat/)

Assembly

Assemble viral or bacterial genomes from long or short reads.

(https://zenodo.org/record/6827984,5289278)

Enrichment analysis

Enrichment Analysis for Uncovering Gene Function Networks

(clusterProfiler 4.0: A universal enrichment tool for interpreting omics data.  doi: 10.1016/j.xinn.2021.100141)

Methylation sequencing analysis

High-resolution methylation sequencing analysis for epigenetic insights

(The nf-core framework for community-curated bioinformatics pipelines https://zenodo.org/record/8029942)

ChipSeq analysis

Enrichment Analysis for Uncovering Gene Function Networks

(ChIP-AP: an integrated analysis pipeline for unbiased ChIP-seq analysis https://doi.org/10.1093/bib/bbab537)

Personalized Analysis

A custom analysis that matches your expertise according to the latest research. The pipeline will be based on previously published findings.

There's no extra charge for its development.

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